SNP Profiles matching IMC 47

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AG
1._IMC_47	CC	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
2._NA_26	CC	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
3._MARPER_40	CT	AG	CG	TT	-	CC	TT	-	TT	-	AT	GG	-	AG
4._RUQ_849	_	AG	CG	TT	_	_	_	GT	_	_	_	_	CC	AA
5._RUQ_1055	_	AG	CG	TT	_	_	_	GT	_	_	_	_	CC	AA
6._RUQ_1056	CC	AG	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AG
7._IMC_67	CC	AG	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GG	CC	AC
1._IMC_47	TT	AA	GG	CC	TT	CC	GG	AA	CC	AC	GG	GG	CC	AC
2._NA_26	TT	AA	GG	CC	TT	CC	GG	AA	CC	AC	GG	GG	CC	AC
3._MARPER_40	TT	AA	GG	-	CT	-	GG	AA	CC	-	CG	-	CC	AC
4._RUQ_849	_	_	_	_	TT	CC	GG	_	CC	AC	CG	GG	CC	AC
5._RUQ_1055	_	_	_	_	TT	CC	GG	_	CC	AC	CG	GG	CC	AC
6._RUQ_1056	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CC	AC
7._IMC_67	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GT	CC	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AG	AT	CT	AG	CG	AC	CT	GT	CC	AT	CG	X_X	X_X
1._IMC_47	AA	AG	AT	CT	AG	CC	AC	CT	TT	CC	AT	CG	X_X	X_X
2._NA_26	AA	AG	AT	CT	AG	GG	AC	CT	TT	CC	AT	CG	X_X	X_X
3._MARPER_40	AA	AG	-	TT	AG	-	-	-	GT	-	AT	-	X_X	X_X
4._RUQ_849	AA	_	AT	CT	AG	CG	AC	CT	TT	CC	_	_	X_X	X_X
5._RUQ_1055	AA	_	AT	CT	AG	CG	AC	CT	TT	CC	_	_	X_X	X_X
6._RUQ_1056	AA	GG	AA	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X
7._IMC_67	AA	GG	AA	CT	AG	CG	AC	CT	GT	CC	TT	GG	X_X	X_X

Input profile: IMC_47 RUQ_849

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._IMC_47

95 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

2._NA_26

95 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B E352 T5

Dapeng Zhang, 2016

3._MARPER_40

92.3 %
26 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D 680

Dapeng Zhang, 2014

4._IMC_47 RUQ_849

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._IMC_57 RUQ_1055

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._IMC_67 RUQ_1056

90 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

7._IMC_67

90 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 647

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching IMC 47

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Input profile: IMC_47 RUQ_849

1._IMC_47

95 % 40 shared markers

2._NA_26

95 % 40 shared markers

3._MARPER_40

92.3 % 26 shared markers

4._IMC_47 RUQ_849

91.7 % 24 shared markers

5._IMC_57 RUQ_1055

91.7 % 24 shared markers

6._IMC_67 RUQ_1056

90 % 40 shared markers

7._IMC_67

90 % 40 shared markers

95 %
40 shared markers

95 %
40 shared markers

92.3 %
26 shared markers

91.7 %
24 shared markers

91.7 %
24 shared markers

90 %
40 shared markers

90 %
40 shared markers